Literature

Authors	Year	Title
L. Aagesen	2005	Direct optimization, affine gap costs, and node stability
F. E. Anderson, Swofford D. L.	2004	Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
R. H. Baker, Yu, X., DeSalle, R.	1998	Assessing the relative contribution of molecular and morphological characters in sumultaneous analysis trees
K. Dolphin, Belshaw, R., Orme, C. D. L., Quicke, D. L. J.	2000	Noise and incongruence: interpreting results of the incongruence length difference test
D. R. Frost, Rodrigues, M. T., Grant, T., Titus, T. A.	2001	Phylogenetics of the lizard genus Tropidurus (Squamata : Tropiduridae : Tropidurinae): Direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology
G. Haszprunar	1998	Parsimony analysis as a specific kind of homology estimation and the implications for character weighting
F. Legendre, Whiting, M. F., Bordereau, C., Cancello, Eliana, M., Evans, T. A., Grandcolas, P.	2008	The phylogeny of termites (Dictyoptera: Isoptera) based on mitochondrial and nuclear markers: implications for the evolution of the worker and pseudergate castes, and foraging behaviors
C. Lydeard, Holznagel, W. E., Schnare, M. N., Gutell, R. R.	2000	Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
M. Matsumoto	2003	Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences
M. Matsumoto	2003	Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences
J. Schultz, Wolf M.	2009	ITS2 sequence–structure analysis in phylogenetics: a how-to manual for molecular systematics
A. B. Smith	1998	What does palaeontology contribute to systematics in a molecular world?
W. L. Smith, Wheeler W. C.	2004	Polyphyly of the mail-cheeked fishes (Teleostei : Scorpaeniformes): evidence from mitochondrial and nuclear sequence data
C. A. Stepien, Hubers, A. N., Skidmore, J. L.	1999	Diagnostic genetic markers and evolutionary relationships among invasive dreissenoid and corbiculoid bivalves in North America: phylogenetic signal from mitochondrial 16S rDNA
X. Xia, Xie, Z., Salemi, M., Chen, L., Wang, Y.	2003	An index of substitution saturation and its application