Literature

Authorssort descendingYearTitle
L. Aagesen2005Direct optimization, affine gap costs, and node stability
F. E. Anderson, Swofford D. L.2004Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
R. H. Baker, Yu, X., DeSalle, R.1998Assessing the relative contribution of molecular and morphological characters in sumultaneous analysis trees
M. Barucca, Olmo, E., Schiaparelli, S., Canapa, A.2004Molecular phylogeny of the family Pectinidae (Mollusca : Bivalvia) based on mitochondrial 16S and 12S rRNA genes
K. Dolphin, Belshaw, R., Orme, C. D. L., Quicke, D. L. J.2000Noise and incongruence: interpreting results of the incongruence length difference test
D. Ó. Foighil, Taylor D. K.2000Evolution of parental care and ovulation behavior in oysters
D. R. Frost, Rodrigues, M. T., Grant, T., Titus, T. A.2001Phylogenetics of the lizard genus Tropidurus (Squamata : Tropiduridae : Tropidurinae): Direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology
G. Haszprunar1998Parsimony analysis as a specific kind of homology estimation and the implications for character weighting
C. J. Jozefowicz, Foighil D. Ó.1998Phylogenetic analysis of southern hemisphere flat oysters based on partial mitochondrial 16S rDNA gene sequences
F. Legendre, Whiting, M. F., Bordereau, C., Cancello, Eliana, M., Evans, T. A., Grandcolas, P.2008The phylogeny of termites (Dictyoptera: Isoptera) based on mitochondrial and nuclear markers: implications for the evolution of the worker and pseudergate castes, and foraging behaviors
D. T. J. Littlewood1994Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences
C. Lydeard, Holznagel, W. E., Schnare, M. N., Gutell, R. R.2000Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
K. Mabuchi, Okuda, N., Nishida, M.2006Molecular phylogeny and stripe pattern evolution in the cardinalfish genus Apogon
M. Matsumoto2003Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences
M. Matsumoto2003Phylogenetic analysis of the subclass Pteriomorphia (Bivalvia) from mtDNA COI sequences
J. K. Park, Foighil D. O.2000Sphaeriid and corbiculid clams represent separate heterodont bivalve radiations into freshwater environments
Y. J. Passamaneck, Schander, C., Halanych, K. M.2004Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences
M. Schilthuizen, Gittenberger, E., Gultyaev, A. P.1995Phylogenetic relationships inferred from the sequence and secondary structure of ITS1 rRNA in Albinaria and putative Isabellaria species (Gastropoda, Pulmonata, Clausiliidae)
J. Schultz, Wolf M.2009ITS2 sequence–structure analysis in phylogenetics: a how-to manual for molecular systematics
A. B. Smith1998What does palaeontology contribute to systematics in a molecular world?
W. L. Smith, Wheeler W. C.2004Polyphyly of the mail-cheeked fishes (Teleostei : Scorpaeniformes): evidence from mitochondrial and nuclear sequence data
J. S. Sparks, Smith W. L.2004Phylogeny and biogeography of the Malagasy and Australasian rainbowfishes (Teleostei : Melanotaenioidei): Gondwanan vicariance and evolution in freshwater
C. A. Stepien, Hubers, A. N., Skidmore, J. L.1999Diagnostic genetic markers and evolutionary relationships among invasive dreissenoid and corbiculoid bivalves in North America: phylogenetic signal from mitochondrial 16S rDNA
M. Weksler2003Phylogeny of Neotropical oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear IRBP exon
S. T. Williams, Reid, D. G., Littlewood, D. T. J.2003A molecular phylogeny of the Littorininae (Gastropoda : Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern Ocean
X. Xia, Xie, Z., Salemi, M., Chen, L., Wang, Y.2003An index of substitution saturation and its application
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith