Literature

AuthorsYearsort descendingTitle
A. W. F. Edwards, Cavalli-Sforza L. L.1964Reconstruction of evolutionary trees
J. S. Farris1969A successive approximations approach to character weighting
A. G. Kluge, Farris J.1969Quantitative phyletics and the evolution of anurans
R. D. Purchon, Brown D.1969Phylogenetic interrelationships among families of bivalve molluscs
J. S. Farris1970Methods for computing Wagner trees
J. S. Farris1973A probability model for inferring evolutionary trees
J. Felsenstein1978Cases in which parsimony or compatibility methods will be positively misleading
J. Cracraft, Eldredge N.1979Phylogenetic analysis and paleontology. Proceedings of a symposium entitled "Phylogenetic Models," convened at the North American Paleontological Convention 2, Lawrence, Kansas, August 8, 1977
Eldredge, N.1979Cladism and common sense
N. Eldredge, Cracraft J.1980Phylogenetic patterns and the evolutionary process: method and theory in comparative biology
M. Kimura1980A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
O. Gotoh1982An improved algorithm for matching biological sequences
M. Kimura1982The neutral theory as a basis for understanding the mechanism of evolution and variation at the molecular level
J. S. Farris1983The logical basis of phylogenetic analysis
R. Holmquist1983Transitions and transversions in evolutionary descent: an approach to understanding
E. Sober1983Parsimony in systematics: philosophical issues
A. R. Templeton1983Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and apes
A. R. Templeton1983Convergent evolution and nonparametric inferences from restriction data and DNA sequences
C. Lanave, Preparata, , G., Saccone, C., Serio, G.1984A new method for calculating evolutionary substitution rates
J. Felsenstein1985Phylogenies and the comparative method
S. Tavaré1986Some probabilistic and statistical problems in the analysis of DNA sequences
R. DeSalle, Freedman, T., Prager, E. M., Wilson, A. C.1987Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila
K. Bremer1988The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction
F. Krauss1988An empirical evaluation of the use of the ontogenetic polarization criterion in phylogenetic inference
J. S. Farris1989The retention index and the rescaled consistency index
J. Hein1989A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
J. Hein1989A tree reconstruction method that is economical in the number of pairwise comparisons used
M. D. Hendy, Penny D.1989A framework for the quantitative study of evolutionary trees
B. Kessing, Croom, H., Martin, A., McIntosh, C., W. Mcmillan, O., Palumbi, S.1989The simple fool's guide to PCR
H. Kishino, Hasegawa M.1989Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
N. Saitou1989A theoretical study of the underestimation of brench length by the maximum parsimony principle
N. Goldman1990Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analysis
H. Kishino, Miyata, T., Hasegawa, M.1990Maximum likelihood inference of protein phylogeny and the origin of chloroplasts., J. Mol. Evol., 30, 151-160.
D. P. Mindell, Honeycutt R. L.1990Ribosomal RNA in vertebrates: evolution and phylogenetic applications
F. Rodriguez, Oliver, , J. F., Marin, A., Medina, J. R.1990The general stochastic model of nucleotide substitutions
Swofford, D. L., Olsen G. J.1990Phylogeny reconstruction
W. C. Wheeler1990Nucleic acid sequence phylogeny and random outgroups
D. M. Hillis1991Discriminating between phylogenetic signal and random noise in DNA sequences
J. P. Huelsenbeck1991Tree-length distribution skewness: an indicator of phylogenetic iformation
A. Seilacher1991Self-organizing mechanisms in morphogenesis and evolution
D. L. Swofford1991When are phylogeny estimates from molecular and morphological data incongruent?
D. M. Hillis, Huelsenbeck J. P.1992Signal, noise, and reliability in molecular phylogenetic analyses
M. Källersjö, Farris, J. S., Kluge, A. G., Bult, C.1992Skewness and permutation
M. A. Norell, Novacek M. J.1992The fossil record and evolution: comparing cladistic and paleontologic evidence for vertebrate history
A. Rzhetsky, Nei M.1992A simple method for estimating and testing minimum-evolution trees
A. Rzhetsky, Nei M.1992Statistical properties of the ordinary least-squares, generalized least-squares, and minimum evolution methods of phylogenetic inference
J. J. Bull, Huelsenbeck, J. P., Cunningham, C. W., Swofford, D. L., Waddell, P. J.1993Partitioning and combining data in phylogenetic analysis
M. T. Dixon, Hillis D. M.1993Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis
A. Knight, Mindell D. P.1993Substitution bias weighting of DNA sequence evolution and the phylogenetic position of Fea's viper
K. C. Nixon, Carpenter J. M.1993On outgroups

Pages

Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith