Authorssort descendingYearTitle
S. F. Altschul, Gish, W., Miller, W., Myers, E. W., Lipman, D. J.1990Basic local alignment search tool
S. F. Altschul, Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman, D. J.1997Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
D. R. Frost, Rodrigues, M. T., Grant, T., Titus, T. A.2001Phylogenetics of the lizard genus Tropidurus (Squamata : Tropiduridae : Tropidurinae): Direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology
O. Gotoh1982An improved algorithm for matching biological sequences
R. R. Gutell, Larsen, N., Woese, C. R.1994Lessons from an evolving rRNA: 16S and 23S r RNA structures from a comparative perspective
J. Hein1989A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
J. Hein1989A tree reconstruction method that is economical in the number of pairwise comparisons used
T. Jiang, Lawler, E. L., Wang, A.1994Aligning sequences via an evolutionary tree: complexity and approximation
M. A. Larkin, Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., Higgins, D. G.2007Clustal W and Clustal X version 2.0
A. Löytynoja, Goldman N.2008Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
D. A. Morrison2006Multiple sequence alignment for phylogenetic purposes
A. J. Phillips2006Homology assessment and molecular sequence alignment
S. Schulmeister, Wheeler, W. C., Carpenter, J. M.2002Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis
B. Schwikowski, Vingron M.1997The deferred path heuristic for the generalized tree alignment problem
J. D. Thompson, Gibson, T. J., Plewniak, F., Jeanmougin, F., Higgins, D. G.1997The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
D. Wells, Brown D.1991Histone and histone gene compilation and alignment update
W. C. Wheeler2003Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search
W. Wheeler1999Fixed character states and the optimization of molecular sequence data
W. C. Wheeler1996Optimization alignment: the end of multiple sequence alignment in phylogenetics?
W. C. Wheeler1995Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith