@article {7811,
	title = {Nucleic acid sequence phylogeny and random outgroups},
	journal = {Cladistics},
	volume = {6},
	year = {1990},
	note = {DO NOT HAVE},
	pages = {363{\textendash}367},
	keywords = {outgroup, phylogenetics},
	author = {Wheeler, W. C.}
}
@article {7814,
	title = {Measuring topological congruence by extending character techniques},
	journal = {Cladistics},
	volume = {15},
	year = {1999},
	note = {DO NOT HAVE},
	pages = {131{\textendash}135},
	keywords = {congruence, phylogenetics},
	author = {Wheeler, W. C.}
}
@inbook {7817,
	title = {Optimization alignment: down, up, error, and improvements},
	booktitle = {Techniques in molecular systematicsand evolution},
	year = {2002},
	note = {DO NOT HAVE},
	pages = {55-69},
	publisher = {Birkh{\"a}user},
	organization = {Birkh{\"a}user},
	address = {Basel},
	keywords = {poy},
	author = {Wheeler, W. C.},
	editor = {DeSalle, Rob and Giribet, G. and Wheeler, W. C.}
}
@book {7821,
	title = {Dynamic homology and phylogenetic systematics: a unified approach using POY},
	year = {2006},
	note = {book},
	pages = {365},
	publisher = {American Museum of Natural History},
	organization = {American Museum of Natural History},
	address = {New York},
	keywords = {homology, molecular characters, phylogenetics},
	author = {Wheeler, W. C. and Aagesen, Lone and Arango, Claudia P. and Faivovich, Juli{\'a}n and Grant, Taran and D{\textquoteright}Haese, Cyrille and Janies, Daniel and Smith, W. L. and Var{\'o}n, A. and Giribet, G.}
}
@article {7499,
	title = {Mitochondrial intergenic spacer in fairy basslets (Serranidae: Anthiinae) and the simultaneous analysis of nucleotide and rearrangement data},
	journal = {American Museum Novitates},
	volume = {3652},
	year = {2009},
	note = {PDF},
	pages = {1-10},
	keywords = {dna rearrangement, molecular characters, mtDNA, poy},
	author = {Smith, W. L. and Smith, K. R. and Wheeler, W. C.}
}
@article {7500,
	title = {Polyphyly of the mail-cheeked fishes (Teleostei : Scorpaeniformes): evidence from mitochondrial and nuclear sequence data},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {32},
	number = {2},
	year = {2004},
	note = {PDFTimes Cited: 8ReviewEnglishCited References Count: 118838ry},
	month = {AUG},
	pages = {627-646},
	abstract = {Mitochondrial and nuclear DNA sequence data for 105 acanthomorph taxa are analyzed to address questions of scorpaeniform monophyly and relationships. The combination of 3425 aligned base pairs from the mitochondrial small subunit rDNA (12S), large subunit rDNA (16S), and tRNA-Val and the nuclear large subunit rDNA (28S), histone H3, and TMO-4c4 loci are analyzed. Representatives of all scorpaeniform suborders and 32 of 36 scorpaeniform families are included with most suborders represented by multiple species. In addition to 69 scorpaeniform taxa, 36 outgroup taxa, including representatives of most families previously conjectured to be related to the Scorpaeniformes, are analyzed due to serious concerns of scorpaeniform monophyly. The traditionally recognized scorpaeniform fishes are recovered as polyphyletic, The 13 representatives of the Atheriniformes, Blennioidei, Gasterosteoidei, Grammatidae, Notothenioidei, Percidae, Trichodontidae, and Zoarcoidei included in the analysis are all nested within the least inclusive clade that includes all traditionally recognized scorpaeniforms. The scorpaenoid lineage is widely polyphyletic, and its intrarelationships differed significantly from previous hypotheses. The cottoid lineage is paraphyletic with only the presence of the Trichodontidae, as the sister-taxon of the Cottoidei, disrupting the traditional subordinal hypothesis of relationships. (C) 2004 Elsevier Inc. All rights reserved.},
	keywords = {direct optimization, evolution, mtDNA, nuDNA, phylogenetics, poy, taxonomy},
	url = {<u><Go to ISI>://000222732000016</u>},
	author = {Smith, W. L. and Wheeler, W. C.}
}
@article {7421,
	title = {Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis},
	journal = {Cladistics},
	volume = {18},
	number = {5},
	year = {2002},
	note = {PDFTimes Cited: 18ArticleEnglishCited References Count: 88612el},
	month = {OCT},
	pages = {455-484},
	abstract = {The first simultaneous analysis of molecular and morphological data of basal hymenopterans that includes exemplars from all families is presented. DNA sequences (of approximately 2000-2700 by for each taxon) from the nuclear genes 18S and 285 and the mitochondrial genes 16S and CO1 have been sequenced for 39 taxa (four outgroup taxa, 29 symphytans, and six apocritans). These DNA sequences and 236 morphological characters from Vihelmsen [Zool. J. Linnean Soc. 131 (2001) 393] were analyzed separately as well as simultaneously. All analyses were performed on unaligned sequences, using the optimization alignment (= direct optimization) method. Sensitivity analysis sensu Wheeler [Syst. Biol. 44 (1995) 321] was applied by analyzing the data under nine different combinations of analysis parameter values. The superfamily level relationships of basal hymenopterans as proposed by Vilhelmsen [Zool. J. Linnean Soc. 131 (2001) 393] and Ronquist et al. [Zool. Scr. 28 (1999) 13] are mostly confirmed, except that Pamphilioidea is the sister group to Tenthredinoidea s.l. and that Anaxyelidae (i.e., Syntexis libocedrii) and Siricidae are supported as a monophyletic group, partly reestablishing the traditional concept of Siricoidea. The resulting hypothesis that best represents the combined evidence from morphology and DNA. sequences is (Xyeloidea (Tenthredinoidea s.l. Pamphilioidea) (Cephoidea (Siricoidea (Xiphydrioidea (Orussidae Apocrita))))), with Siricoidea = Anaxyelidae + Siricidae. The phylogenetic system within Tenthredinoidea s.l., derived from the combined evidence, is (Blasticotomidae (Tenthredinidae including Diprionidae (Cimbicidae (Argidae Pergidae)))). (C) 2002 Elsevier Science (USA). All rights reserved.},
	keywords = {alignment, congruence, direct optimization, morphology, mtDNA, optimization, phylogenetics, poy, sensitivity},
	url = {<u><Go to ISI>://000179061500001</u>},
	author = {Schulmeister, S. and Wheeler, W. C. and Carpenter, J. M.}
}
@article {6588,
	title = {Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)},
	journal = {Systematic Biology},
	volume = {56},
	number = {2},
	year = {2007},
	note = {PDF},
	pages = {321-329},
	keywords = {biogeography, phylogenetics, poy, supermap},
	author = {Janies, Daniel and Hill, Andrew W. and Guralnick, Robert and Habib, Farhat and Waltari, Eric and Wheeler, W. C.}
}
@article {6343,
	title = {Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathyhelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology},
	journal = {Systematic Biology},
	volume = {49},
	year = {2000},
	note = {DO NOT HAVE},
	pages = {539-562},
	author = {Giribet, G. and Distel, Daniel L. and Polz, M. and Sterrer, W. and Wheeler, W. C.}
}
