Literature

Authorssort ascendingYearTitle
Z. Yang1993Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
B. Winnepenninckx1996Investigation of molluscan phylogeny on the basis of 18S rRNA sequences
B. Winnepenninckx1996Investigation of molluscan phylogeny on the basis of 18S rRNA sequences
J. Wakeley1993Substitution-rate variation among sites and the estimation of transition bias
K. Tamura, Nei M.1993Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
N. Takezaki, Gojobori T.1999Correct and incorrect vertebrate phylogenies obtained by the entire mitochondrial DNA sequences
J. Sullivan, Abdo, Z., Joyce, P., Swofford, D. L.2005Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation
M. Spencer, Susko, E., Roger, A. J.2005Likelihood, parsimony, and heterogeneous evolution
N. Saitou, Nei M.1987The neighbor-joining method: a new method for reconstructing phylogenetic trees
A. Rzhetsky, Nei M.1992A simple method for estimating and testing minimum-evolution trees
H. Philippe, Lecointre, G., Lê, H. Lanh Vân, Le Guyader, H.1996A critical study of homoplasy in molecular data with the use of a morphologically based cladogram, and its consequences for character weighting
W. C. Navidi, Churchill, G. A., von Haeseler, A.1991Methods for inferring phylogenies from nucleotide acid sequence data by using maximum likelihood and linear invariants
P. J. Lockhart, Steel, M. A., Hendy, M. D., Penny, D.1994Recovering evolutionary trees under a more realistic model of sequence evolution
M. K. Kuhner, Felsenstein J.1994A simulation comparison of phylogeny algorithms under equaland unequal evolutionary rates
J. Hein1989A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
J. Hein1989A tree reconstruction method that is economical in the number of pairwise comparisons used
X. Gu1995Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites
D. H. A. Fitch, Bugaj-Gaweda, B., Emmons, S. W.199518S ribosomal RNA gene phylogeny for some Rhabditidae related to Caenorhabditis
M. T. Dixon, Hillis D. M.1993Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis
P. Darlu, Lecointre G.2002When does the incongruence length difference test fail?
C. W. Cunningham1997Can three incongruence tests predict when data should be combined?
M. P. Cummings, Otto, S. P., Wakeley, J.1995Sampling properties of DNA sequence data in phylogenetic analysis
G. C. Conant, Lewis P. O.2001Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference
L. S. Adamkewicz, Harasewych, M. G., Blake, J., Saudek, D., Bult, C. J.1997A molecular phylogeny of the bivalve mollusks
L. S. Adamkewicz, Harasewych, M. G., Blake, J., Saudek, Deborah, Bult, Carol J.1997A molecular phylogeny of the bivalve mollusks
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith