Literature

Authorssort descendingYearTitle
R. H. Baker, Yu, X., DeSalle, R.1998Assessing the relative contribution of molecular and morphological characters in sumultaneous analysis trees
L. Bromham, Woolfit, M., Lee, M. S. Y., Rambaut, A.2002Testing the relationship between morphological and molecular rates of change along phylogenies
M. T. Dixon, Hillis D. M.1993Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis
N. P. Giannini, Simmons N. B.2003A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes
N. Goldman1990Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analysis
D. M. Hillis1991Discriminating between phylogenetic signal and random noise in DNA sequences
B. Kessing, Croom, H., Martin, A., McIntosh, C., W. Mcmillan, O., Palumbi, S.1989The simple fool's guide to PCR
M. Kimura1982The neutral theory as a basis for understanding the mechanism of evolution and variation at the molecular level
H. Kishino, Hasegawa M.1989Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
B. Kolaczkowski, Thornton J. W.2004Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
F. Legendre, Whiting, M. F., Bordereau, C., Cancello, Eliana, M., Evans, T. A., Grandcolas, P.2008The phylogeny of termites (Dictyoptera: Isoptera) based on mitochondrial and nuclear markers: implications for the evolution of the worker and pseudergate castes, and foraging behaviors
P. O. Lewis1998Maximum likelihood as an alternative to parsimony for inferring phylogeny using nucleotide sequence data
C. Lydeard, Holznagel, W. E., Schnare, M. N., Gutell, R. R.2000Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
C. P. Meyer2003Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics
C. P. Meyer, Geller, J. B., Paulay, G.2005Fine scale endemism on coral reefs: archipelagic differentiation in turbinid gastropods
D. A. Morrison2006Multiple sequence alignment for phylogenetic purposes
L. Prendini2001Species or supraspecific taxa as terminals in cladistic analysis? Groundplans versus exemplars revisited
N. Saitou1989A theoretical study of the underestimation of brench length by the maximum parsimony principle
T. R. Schultz, Engel, M. S., Ascher, J. S.2001Evidence for the origin of eusociality in the corbiculate bees (Hymenoptera: Apidae)
D. L. Swofford1991When are phylogeny estimates from molecular and morphological data incongruent?
A. R. Templeton1983Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and apes
W. Wheeler2001Homology and the optimization of DNA sequence data
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith