Literature

Authorssort descendingYearTitle
K. D. Angielczyk2002A character-based method for measuring the fit of a cladogram to the fossil record
Q. D. Atkinson, Gray R. D.2005Curious parallels and curious connections: phylogenetic thinking in biology and historical linguistics
R. H. Baker, DeSalle R.1997Multiple sources of character information and the phylogeny of Hawaiian drosophilids
R. Bang, DeSalle, R., Wheeler, W.2000Transformationalism, taxism, and developmental biology in systematics
F. K. Barker, Lutzoni F. M.2002The utility of the incongruence length difference test
M. J. Benton, Hitchin, R., Wills, M. A.1999Assessing congruence between cladistic and stratigraphic data
J. J. Bull, Huelsenbeck, J. P., Cunningham, C. W., Swofford, D. L., Waddell, P. J.1993Partitioning and combining data in phylogenetic analysis
K. M. A. Chan, Moore B. R.2002Whole-tree methods for detecting differential diversification rates
M. Dowton, Austin A. D.2002Increased incongruence does not necessarily indicate increased phylogenetic accuracy—the behavior of the incongruence length difference test in mixed-model analysis
D. P. Faith, Trueman J. W. H.2001Towards an inclusive philosophy for phylogenetic inference
J. S. Farris, Källersjö, M., Kluge, A. G., Bult, C.1995Constructing a significance test for congruence
J. A. Finarelli, Clyde W. C.2002Comparing the gap excess ratio and the retention index of the stratigraphic character
G. Giribet, Distel, D. L., Polz, M., Sterrer, W., Wheeler, W. C.2000Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathyhelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology
N. Goldman, Anderson, J. P., Rodrigo, A. G.2000Likelihood-based tests of topologies in phylogenetics
S. Guindon, Gascuel O.2003A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
H. M. Hines2008Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus)
G. Hormiga, Arnedo, M., Gillespie, R. G.2003Speciation on a conveyor belt: sequential colonization of the Hawaiian Islands by Orsonwelles spiders (Araneae, Linyphiidae)
D. Janies, Hill, A. W., Guralnick, R., Habib, F., Waltari, E., Wheeler, W. C.2007Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)
A. Knight, Mindell D. P.1993Substitution bias weighting of DNA sequence evolution and the phylogenetic position of Fea's viper
P. O. Lewis2001A likelihood approach to estimating phylogeny from discrete morphological character data
D. R. Maddison, Swofford, D. L., Maddison, W. P.1997NEXUS: an extensible file format for systematic information
S. L. Messenger, McGuire J. A.1998Morphology, molecules, and the phylogenetics of cetaceans
M. M. Miyamoto, Cannatella D. C.1995Editorial Comment: Special Issue of Systematic Biology and Introduction of Editor-Elect
J. J. Morrone1994On the identification of areas of endemism
M. Pagel1999The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies
D. Posada, Buckley T. R.2004Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests
L. Prendini2001Species or supraspecific taxa as terminals in cladistic analysis? Groundplans versus exemplars revisited
F. J. Rohlf, Loy, A., Corti, M.1996Morphometric analysis of Old World Talpidae (Mammalia, Insectivora) using partial warp scores
A. R. Solow, Mound, L. A., Gaston, K. J.1995Estimating the rate of synonymy
D. L. Sullivan1996Combining data with different distributions of among-site variation
D. L. Swofford, Waddell, P. J., Huelsenbeck, J. P., Foster, P. G., Lewis, P. O., Rogers, J. S.2001Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
W. C. Wheeler1995Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
M. A. Wills1999Congruence between phylogeny and stratigraphy: randomization tests and the gap excess ratio
Z. Yang1998On the best evolutionary rate for phylogenetic analysis
A. D. Yoder, Irwin, J. A., Payseur, B. A.2001Failure of the ILD to determine data combinability for slow Loris phylogeny
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith