Literature

Authors	Year	Title
J. Felsenstein	1985	Phylogenies and the comparative method
J. Felsenstein	1978	Cases in which parsimony or compatibility methods will be positively misleading
J. A. Finarelli, Clyde W. C.	2002	Comparing the gap excess ratio and the retention index of the stratigraphic character
D. L. Fox, Fisher, D. C., Leighton, L. R.	1999	Reconstructing phylogeny with and without temporal data
J. V. Freudenstein, Pickett, K. M., Simmons, M. P., Wenzel, J. W.	2003	From basepairs to birdsongs: phylogenetic data in the age of genomics
D. R. Frost, Rodrigues, M. T., Grant, T., Titus, T. A.	2001	Phylogenetics of the lizard genus Tropidurus (Squamata : Tropiduridae : Tropidurinae): Direct optimization, descriptive efficiency, and sensitivity analysis of congruence between molecular data and morphology
N. Galtier, Gouy M.	1995	Inferring phylogenies from DNA sequences of unequal base compositions
J. Gatesy, O'Grady, P., Baker, R. H.	1999	Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa
N. P. Giannini, Simmons N. B.	2003	A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes
G. Giribet	2005	Generating implied alignments under direct optimization using POY
G. Giribet	2001	Exploring the behavior of POY, a program for direct optimization of molecular data
G. Giribet, Wheeler W. C.	2002	On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data
G. Giribet, Wheeler W. C.	2002	On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data
N. Goldman	1990	Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analysis
N. Goldman, Anderson, J. P., Rodrigo, A. G.	2000	Likelihood-based tests of topologies in phylogenetics
P. A. Goloboff	1999	Analyzing large data sets in reasonable times: solutions for composite optima
P. A. Goloboff, Farris J. S.	2001	Methods for quick consensus estimation
O. Gotoh	1982	An improved algorithm for matching biological sequences
T. Grant, Kluge A. G.	2005	Stability, sensitivity, science and heurism
T. Grant, Kluge A. G.	2003	Data exploration in phylogenetic inference: scientific, heuristic, or neither
T. A. Grantham	2004	The role of fossils in phylogeny reconstruction: why is it so difficult to integrate paleobiological and neontological evolutionary biology?
D. Graur, Li W. - H.	2000	Fundamentals of molecular evolution
D. Graur, Martin W.	2004	Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
X. Gu	1995	Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites
S. Guindon, Gascuel O.	2003	A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
M. Haase	Submitted	Rapid and convergent evolution of parental care in hydrobiid gastropods from New Zealand
A. Hassanin, Lecointre, G., Tillier, S.	1998	The 'evolutionary signal' of homoplasy in protein-coding gene sequences and its consequences for a priori weighting in phylogeny
G. Haszprunar	1998	Parsimony analysis as a specific kind of homology estimation and the implications for character weighting
J. Hein	1989	A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given
J. Hein	1989	A tree reconstruction method that is economical in the number of pairwise comparisons used
M. D. Hendy, Penny D.	1989	A framework for the quantitative study of evolutionary trees
D. M. Hillis	1996	Inferring complex phylogenies
D. M. Hillis, Huelsenbeck J. P.	1992	Signal, noise, and reliability in molecular phylogenetic analyses
D. M. Hillis, Huelsenbeck, J. P., Cunningham, C. W.	1994	Application and accuracy of molecular phylogenies
D. M. Hillis	1991	Discriminating between phylogenetic signal and random noise in DNA sequences
Swofford, D. L., Olsen G. J.	1990	Phylogeny reconstruction
H. M. Hines	2008	Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus)
M. Holder, Lewis P. O.	2003	[TITLE BLANK]
R. Holmquist	1983	Transitions and transversions in evolutionary descent: an approach to understanding
J. P. Huelsenbeck	1991	Tree-length distribution skewness: an indicator of phylogenetic iformation
G. S. Jaecks, Carlson S. J.	2001	How phylogenetic inference can shape our view of heterochrony: examples from thecideide brachiopods
D. Janies	2001	Phylogenetic relationships of extant echinoderm classes
D. Janies, DeSalle R.	1999	Development, evolution, and corroboration
D. Janies, Hill, A. W., Guralnick, R., Habib, F., Waltari, E., Wheeler, W. C.	2007	Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)
D. A. Janies, Wheeler W. C.	2001	Efficiency of parallel direct optimization
T. Jiang, Lawler, E. L., Wang, A.	1994	Aligning sequences via an evolutionary tree: complexity and approximation
B. Kessing, Croom, H., Martin, A., McIntosh, C., W. Mcmillan, O., Palumbi, S.	1989	The simple fool's guide to PCR
M. Kimura	1980	A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
M. Kimura	1982	The neutral theory as a basis for understanding the mechanism of evolution and variation at the molecular level
H. Kishino, Hasegawa M.	1989	Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea

Authors