@article {7883, title = {Failure of the ILD to determine data combinability for slow Loris phylogeny}, journal = {Systematic Biology}, volume = {50}, number = {3}, year = {2001}, note = {PDF}, pages = {408-424}, keywords = {ild, phylogenetics}, author = {Yoder, A. D. and Irwin, J. A. and Payseur, B. A.} } @article {7876, title = {On the best evolutionary rate for phylogenetic analysis}, journal = {Systematic Biology}, volume = {47}, number = {1}, year = {1998}, note = {PDF}, pages = {125-133}, keywords = {molecular characters, phylogenetics, rates, substitution rates}, author = {Yang, Ziheng} } @article {7840, title = {Congruence between phylogeny and stratigraphy: randomization tests and the gap excess ratio}, journal = {Systematic Biology}, volume = {48}, number = {3}, year = {1999}, note = {PDF}, pages = {559-580}, keywords = {phylogenetics, stratigraphy}, author = {Wills, Matthew A.} } @article {7812, title = {Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data}, journal = {Systematic Biology}, volume = {44}, number = {3}, year = {1995}, note = {PDF}, pages = {321-331}, keywords = {alignment, congruence, phylogenetics, poy, sensitivity, support}, author = {Wheeler, Ward C.} } @article {7595, title = {Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods}, journal = {Systematic Biology}, volume = {50}, number = {4}, year = {2001}, note = {PDF}, pages = {525-539}, keywords = {ML, parsimony, phylogenetics}, author = {Swofford, David L. and Waddell, Peter J. and Huelsenbeck, John P. and Foster, Peter G. and Lewis, Paul O. and Rogers, James S.} } @article {7580, title = {Combining data with different distributions of among-site variation}, journal = {Systematic Biology}, volume = {45}, year = {1996}, note = {PDF}, pages = {375{\textendash}380}, keywords = {among-site variation, ild, molecular characters, phylogenetics}, author = {Sullivan, D. L.} } @article {7507, title = {Estimating the rate of synonymy}, journal = {Systematic Biology}, volume = {44}, number = {1}, year = {1995}, note = {PDF1063-5157Article type: Full Length Article / In Group(s): Points of View / Full publication date: Mar., 1995 (199503). / Copyright 1995 Society of Systematic Biologists}, pages = {93-96}, publisher = {Society of Systematic Biologists}, keywords = {synonymy, taxonomy}, url = {http://links.jstor.org/sici?sici=1063-5157\%28199503\%2944\%3A1\%3C93\%3AETROS\%3E2.0.CO\%3B2-O }, author = {Solow, Andrew R. and Mound, Laurence A. and Gaston, Kevin J.} } @article {7318, title = {Morphometric analysis of Old World Talpidae (Mammalia, Insectivora) using partial warp scores}, journal = {Systematic Biology}, volume = {45}, year = {1996}, note = {PDF}, pages = {344-362}, keywords = {geometric morphometrics, morphometrics}, author = {Rohlf, F. J. and Loy, A. and Corti, M.} } @article {7224, title = {Species or supraspecific taxa as terminals in cladistic analysis? Groundplans versus exemplars revisited}, journal = {Systematic Biology}, volume = {50}, number = {2}, year = {2001}, note = {PDFTimes Cited: 31Editorial MaterialEnglishCited References Count: 84431xn}, month = {MAR-APR}, pages = {290-300}, keywords = {molecules, morphology, phylogenetics, systematics}, url = {://000168657200009}, author = {Prendini, L.} } @article {7214, title = {Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests}, journal = {Systematic Biology}, volume = {53}, year = {2004}, note = {PDF}, pages = {793-808}, keywords = {bayesian, ML, molecular characters, phylogenetics}, author = {Posada, David and Buckley, T. R.} } @article {7137, title = {The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies}, journal = {Systematic Biology}, volume = {48}, year = {1999}, note = {PDF}, pages = {612-622}, keywords = {maximum likelihood, phylogenetics, statistics}, author = {Pagel, Mark} } @article {6970, title = {Editorial Comment: Special Issue of Systematic Biology and Introduction of Editor-Elect}, journal = {Systematic Biology}, volume = {44}, number = {1}, year = {1995}, note = {1063-5157Article type: Miscellaneous / Full publication date: Mar., 1995 (199503). / Copyright 1995 Society of Systematic Biologists}, pages = {1-2}, publisher = {Society of Systematic Biologists}, url = {http://links.jstor.org/sici?sici=1063-5157\%28199503\%2944\%3A1\%3C1\%3AECSIOS\%3E2.0.CO\%3B2-Q }, author = {Miyamoto, Michael M. and Cannatella, David C.} } @article {6986, title = {On the identification of areas of endemism}, journal = {Systematic Biology}, volume = {43}, number = {3}, year = {1994}, note = {PDF}, pages = {438-441}, keywords = {biogeography, cladistic biogeography, cladistics, endemism, parsimony}, author = {Morrone, Juan J.} } @article {6934, title = {Morphology, molecules, and the phylogenetics of cetaceans}, journal = {Systematic Biology}, volume = {47}, number = {1}, year = {1998}, note = {PDF}, pages = {90-124}, keywords = {cetaceans, molecular characters, molecular clock, morphological characters, phylogeny, total evidence}, author = {Messenger, Sharon L. and McGuire, Jimmy A.} } @article {6843, title = {NEXUS: an extensible file format for systematic information}, journal = {Systematic Biology}, volume = {46}, year = {1997}, note = {PDF}, pages = {590{\textendash}621}, keywords = {phylogenetics}, author = {Maddison, David R. and Swofford, D. L. and Maddison, Wayne P.} } @article {6763, title = {A likelihood approach to estimating phylogeny from discrete morphological character data}, journal = {Systematic Biology}, volume = {50}, number = {6}, year = {2001}, note = {PDF}, pages = {913-925}, keywords = {likelihood, ML, morphological characters, phylogenetics}, author = {Lewis, Paul O.} } @article {6680, title = {Substitution bias weighting of DNA sequence evolution and the phylogenetic position of Fea{\textquoteright}s viper}, journal = {Systematic Biology}, volume = {42}, year = {1993}, note = {PDF}, pages = {18{\textendash}31}, keywords = {dna, molecular characters, phylogenetics, saturation}, author = {Knight, A. and Mindell, D. P.} } @article {6588, title = {Genomic analysis and geographic visualization of the spread of avian influenza (H5N1)}, journal = {Systematic Biology}, volume = {56}, number = {2}, year = {2007}, note = {PDF}, pages = {321-329}, keywords = {biogeography, phylogenetics, poy, supermap}, author = {Janies, Daniel and Hill, Andrew W. and Guralnick, Robert and Habib, Farhat and Waltari, Eric and Wheeler, W. C.} } @article {6529, title = {Speciation on a conveyor belt: sequential colonization of the Hawaiian Islands by Orsonwelles spiders (Araneae, Linyphiidae)}, journal = {Systematic Biology}, volume = {52}, number = {1}, year = {2003}, note = {PDF}, pages = {70-88}, keywords = {arthropoda, biogeography, combined data analyses, molecular clock, partitioned bremer support, phylogeny, poy, sensitivity, speciation}, author = {Hormiga, Gustavo and Arnedo, Miquel and Gillespie, Rosemary G.} } @article {6517, title = {Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus)}, journal = {Systematic Biology}, volume = {57}, number = {1}, year = {2008}, note = {PDF}, pages = {58{\textendash}75}, keywords = {biogeography, insecta, molecular clock, phylogenetics}, author = {Hines, Heather M.} } @article {6420, title = {A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood}, journal = {Systematic Biology}, volume = {52}, number = {5}, year = {2003}, note = {PDF}, pages = {696-704}, keywords = {likelihood, ML, phylogenetics, phyml}, author = {Guindon, St{\'e}phane and Gascuel, Olivier} } @article {6354, title = {Likelihood-based tests of topologies in phylogenetics}, journal = {Systematic Biology}, volume = {49}, number = {4}, year = {2000}, note = {PDF}, pages = {652-670}, keywords = {kishino-hasegawa test, likelihood, phylogenetics, shimodaira-hasegawa test}, author = {Goldman, Nick and Anderson, Jon P. and Rodrigo, Allen G.} } @article {6343, title = {Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathyhelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology}, journal = {Systematic Biology}, volume = {49}, year = {2000}, note = {DO NOT HAVE}, pages = {539-562}, author = {Giribet, G. and Distel, Daniel L. and Polz, M. and Sterrer, W. and Wheeler, W. C.} } @article {6267, title = {Comparing the gap excess ratio and the retention index of the stratigraphic character}, journal = {Systematic Biology}, volume = {51}, number = {1}, year = {2002}, note = {PDF}, pages = {166-176}, keywords = {paleontology, phylogenetics, stratigraphy}, author = {Finarelli, John A. and Clyde, William C.} } @article {6242, title = {Towards an inclusive philosophy for phylogenetic inference}, journal = {Systematic Biology}, volume = {50}, number = {3}, year = {2001}, note = {PDF}, pages = {331-350}, keywords = {cladistics, likelihood, parsimony, philosophy, phylogenetics, popper}, author = {Faith, Daniel P. and Trueman, John W. H.} } @article {6252, title = {Constructing a significance test for congruence}, journal = {Systematic Biology}, volume = {44}, number = {4}, year = {1995}, note = {PDF}, pages = {570-572}, keywords = {congruence, ild, phylogenetics, statistics}, author = {Farris, James S. and K{\"a}llersj{\"o}, Mari and Kluge, Arnold G. and Bult, Carol} } @article {6186, title = {Increased incongruence does not necessarily indicate increased phylogenetic accuracy{\textemdash}the behavior of the incongruence length difference test in mixed-model analysis}, journal = {Systematic Biology}, number = {51}, year = {2002}, note = {DO NOT HAVE}, pages = {19{\textendash}31}, keywords = {ild, phylogenetics}, author = {Dowton, M. and Austin, A. D.} } @article {5997, title = {Whole-tree methods for detecting differential diversification rates}, journal = {Systematic Biology}, volume = {51}, number = {6}, year = {2002}, note = {PDF}, pages = {855{\textendash}865}, keywords = {diversification, speciation, speciation rates}, author = {Chan, Kai M. A. and Moore, Brian R.} } @article {5949, title = {Partitioning and combining data in phylogenetic analysis}, journal = {Systematic Biology}, volume = {42}, year = {1993}, note = {DO NOT HAVE}, pages = {384-397}, keywords = {phylogenetics, total evidence}, author = {Bull, J. J. and Huelsenbeck, J. P. and Cunningham, C. W. and Swofford, David L. and Waddell, Peter J.} } @article {5838, title = {Assessing congruence between cladistic and stratigraphic data}, journal = {Systematic Biology}, volume = {48}, number = {3}, year = {1999}, note = {PDF}, pages = {581{\textendash}596}, keywords = {paleontology, phylogenetics, stratigraphy}, author = {Benton, Michael J. and Hitchin, Rebecca and Wills, Matthew A.} } @article {5796, title = {Transformationalism, taxism, and developmental biology in systematics}, journal = {Systematic Biology}, volume = {49}, number = {1}, year = {2000}, pages = {19-27}, keywords = {development, evodevo, evolution, systematics}, author = {Bang, Ranhy and DeSalle, Rob and Wheeler, Ward} } @article {5802, title = {The utility of the incongruence length difference test}, journal = {Systematic Biology}, volume = {51}, year = {2002}, note = {DO NOT HAVE}, pages = {625{\textendash}637}, keywords = {ild, phylogenetics}, author = {Barker, F. K. and Lutzoni, F. M.} } @article {5790, title = {Multiple sources of character information and the phylogeny of Hawaiian drosophilids}, journal = {Systematic Biology}, volume = {46}, number = {4}, year = {1997}, note = {PDF}, pages = {654-673}, keywords = {combined data analyses, drosophilidae, partitioned bremer support, phylogenetics, saturation}, author = {Baker, Richard H. and DeSalle, Rob} } @article {5780, title = {Curious parallels and curious connections: phylogenetic thinking in biology and historical linguistics}, journal = {Systematic Biology}, volume = {54}, number = {4}, year = {2005}, note = {PDF}, pages = {513-526}, keywords = {biology, linguistics, phylogenetics}, author = {Atkinson, Quentin D. and Gray, Russell D.} } @article {5747, title = {A character-based method for measuring the fit of a cladogram to the fossil record}, journal = {Systematic Biology}, volume = {51}, number = {1}, year = {2002}, note = {PDF}, pages = {176-191}, keywords = {paleontology, phylogenetics, stratigraphy}, author = {Angielczyk, Kenneth D.} }