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	title = {Correct and incorrect vertebrate phylogenies obtained by the entire mitochondrial DNA sequences},
	journal = {Molecular Biology and Evolution},
	volume = {16},
	number = {5},
	year = {1999},
	note = {PDF},
	pages = {590{\textendash}601},
	keywords = {likelihood, ML, rates},
	author = {Takezaki, Naoko and Gojobori, Takashi}
}
@article {7581,
	title = {Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation},
	journal = {Molecular Biology and Evolution},
	volume = {22},
	number = {6},
	year = {2005},
	note = {PDF},
	pages = {1386{\textendash}1392},
	keywords = {likelihood, ML, model selection, optimization, phylogenetics},
	author = {Sullivan, Jack and Abdo, Zaid and Joyce, Paul and Swofford, David L.}
}
@article {7410,
	title = {Likelihood of ancestor atates in adaptive radiation},
	journal = {Evolution},
	volume = {51},
	number = {6},
	year = {1997},
	note = {PDF},
	pages = {1699-1711},
	keywords = {adaptation, diversification, ecology, likelihood, phylogenetics, radiation},
	author = {Schluter, Dolph and Price, Trevor and Mooers, Arne {\O}. and Ludwig,  Donald}
}
@article {6762,
	title = {Phylogenetic systematics turns over a new leaf},
	journal = {Trends in Ecology and Evolution},
	volume = {16},
	number = {1},
	year = {2001},
	note = {PDF},
	pages = {30-37},
	keywords = {likelihood, ML, morphological characters, phylogenetics},
	author = {Lewis, Paul O.}
}
@article {6763,
	title = {A likelihood approach to estimating phylogeny from discrete morphological character data},
	journal = {Systematic Biology},
	volume = {50},
	number = {6},
	year = {2001},
	note = {PDF},
	pages = {913-925},
	keywords = {likelihood, ML, morphological characters, phylogenetics},
	author = {Lewis, Paul O.}
}
@article {6740,
	title = {A new method for calculating evolutionary substitution rates},
	journal = {Journal of Molecular Evolution},
	volume = {20},
	year = {1984},
	note = {DO NOT HAVE},
	pages = {86-93},
	keywords = {gtr, likelihood, ML, model selection, phylogenetics, substitution},
	author = {Lanave, C. and Preparata, , G. and Saccone,  C. and Serio, G.}
}
@article {6669,
	title = {Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea},
	journal = {Journal of Molecular Evolution},
	volume = {29},
	year = {1989},
	pages = {170-179},
	keywords = {likelihood, molecules, phylogenetics},
	author = {Kishino, Hirohisa and Hasegawa, Masami}
}
@article {6540,
	title = {Gradual or pulsed evolution: when should punctuational explanations be preferred?},
	journal = {Paleobiology},
	volume = {34},
	number = {3},
	year = {2008},
	pages = {360{\textendash}377},
	keywords = {fossil record, likelihood, macroevolution, punctuated equilibrium, simulation},
	author = {Hunt, Gene}
}
@article {6420,
	title = {A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood},
	journal = {Systematic Biology},
	volume = {52},
	number = {5},
	year = {2003},
	note = {PDF},
	pages = {696-704},
	keywords = {likelihood, ML, phylogenetics, phyml},
	author = {Guindon, St{\'e}phane and Gascuel, Olivier}
}
@article {6353,
	title = {Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analysis},
	journal = {Systematic Zoology},
	volume = {39},
	number = {4},
	year = {1990},
	note = {PDF},
	pages = {345-361},
	keywords = {likelihood, ML, molecules, phylogenetics},
	author = {Goldman, Nick}
}
@article {6354,
	title = {Likelihood-based tests of topologies in phylogenetics},
	journal = {Systematic Biology},
	volume = {49},
	number = {4},
	year = {2000},
	note = {PDF},
	pages = {652-670},
	keywords = {kishino-hasegawa test, likelihood, phylogenetics, shimodaira-hasegawa test},
	author = {Goldman, Nick and Anderson, Jon P. and Rodrigo, Allen G.}
}
@article {6242,
	title = {Towards an inclusive philosophy for phylogenetic inference},
	journal = {Systematic Biology},
	volume = {50},
	number = {3},
	year = {2001},
	note = {PDF},
	pages = {331-350},
	keywords = {cladistics, likelihood, parsimony, philosophy, phylogenetics, popper},
	author = {Faith, Daniel P. and Trueman, John W. H.}
}
@article {5938,
	title = {Testing the relationship between morphological and molecular rates of change along phylogenies},
	journal = {Evolution},
	volume = {56},
	number = {10},
	year = {2002},
	note = {PDF},
	pages = {1921{\textendash}1930},
	keywords = {likelihood, ML, molecular clock, molecules, morphology, phylogenetics, punctuated equilibrium, rates},
	author = {Bromham, Lindell and Woolfit, Megan and Lee, Michael S. Y. and Rambaut, Andrew}
}
@article {5742,
	title = {Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {33},
	year = {2004},
	note = {PDF},
	pages = {440-451},
	keywords = {bias, likelihood, long-branch attraction, ML, molecular characters, parsimony, phylogenetics},
	author = {Anderson, Frank E. and Swofford, David L.}
}
