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	title = {Homology and the optimization of DNA sequence data},
	journal = {Cladistics},
	volume = {17},
	year = {2001},
	note = {PDF},
	pages = {S3-S11},
	keywords = {direct optimization, dna, homology, molecules, phylogenetics, poy},
	author = {Wheeler, Ward}
}
@article {7188,
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	journal = {Journal of Biomedical Informatics},
	volume = {39},
	year = {2006},
	note = {reprint},
	pages = {18-33},
	keywords = {alignment, homology, molecules, poy},
	author = {Phillips, Aloysius J.}
}
@article {6757,
	title = {The phylogeny of termites (Dictyoptera: Isoptera) based on mitochondrial and nuclear markers: implications for the evolution of the worker and pseudergate castes, and foraging behaviors},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {48},
	year = {2008},
	note = {PDF},
	pages = {615-627},
	keywords = {arthropoda, behavior, molecules, phylogenetics, phylogeny, poy, sensitivity, termites},
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}
@article {6331,
	title = {A phylogeny of megachiropteran bats (Mammalia: Chiroptera: Pteropodidae) based on direct optimization analysis of one nuclear and four mitochondrial genes},
	journal = {Cladistics},
	volume = {19},
	year = {2003},
	note = {PDF},
	pages = {496-511},
	keywords = {bats, chiroptera, mammalia, molecules, phylogenetics, phylogeny, poy},
	author = {Giannini, Norberto P. and Simmons, Nancy B.}
}
@article {6332,
	title = {Conflict and congruence in a combined DNA{\textendash}morphology analysis of megachiropteran bat relationships (Mammalia: Chiroptera: Pteropodidae)},
	journal = {Cladistics},
	volume = {21},
	year = {2005},
	note = {PDF},
	pages = {411-437},
	keywords = {bats, combined data analyses, mammalia, molecules, morphology, phylogeny, poy},
	author = {Giannini, Norberto P. and Simmons, Nancy B.}
}
@article {5851,
	title = {A phylogeny of extant penguins (Aves: Sphenisciformes) combining morphology and mitochondrial sequences},
	journal = {Cladistics},
	volume = {21},
	year = {2005},
	note = {PDF},
	pages = {209-239},
	keywords = {aves, biogeography, character evolution, combined data analyses, molecules, morphology, mtDNA, phylogeny, poy},
	author = {Bertelli, Sara and Giannini, Norberto P.}
}
