TY - JOUR T1 - Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data JF - Systematic Biology Y1 - 1995 A1 - Wheeler, Ward C. SP - 321 EP - 331 KW - alignment KW - congruence KW - phylogenetics KW - poy KW - sensitivity KW - support VL - 44 N1 - PDF ER - TY - JOUR T1 - Optimization alignment: the end of multiple sequence alignment in phylogenetics? JF - Cladistics Y1 - 1996 A1 - Wheeler, Ward C. SP - 1 EP - 9 KW - alignment KW - direct optimization KW - optimization KW - poy N1 - PDF ER - TY - CHAP T1 - Homology and DNA sequence data T2 - The character concept in evolutionary biology Y1 - 2001 A1 - Wheeler, Ward C. ED - Wagner, G. P. SP - 303 EP - 317 KW - direct optimization KW - dynamic homology KW - homology KW - molecular characters KW - poy JF - The character concept in evolutionary biology PB - Academic Press CY - San Diego N1 - PDF ER - TY - JOUR T1 - Iterative pass optimization of sequence data JF - Cladistics Y1 - 2003 A1 - Wheeler, Ward C. SP - 254 EP - 260 KW - optimization KW - phylogenetics KW - poy VL - 19 N1 - PDF ER - TY - JOUR T1 - Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search JF - Cladistics Y1 - 2003 A1 - Wheeler, Ward C. SP - 261 EP - 268 KW - alignment KW - direct optimization KW - implied alignment KW - phylogenetics KW - poy VL - 19 N1 - PDF ER - TY - JOUR T1 - Dynamic homology and the likelihood criterion JF - Cladistics Y1 - 2006 A1 - Wheeler, Ward C. SP - 157 EP - 170 KW - homology KW - ML KW - phylogenetics KW - poy VL - 22 N1 - PDF ER - TY - JOUR T1 - Efficiency of parallel direct optimization JF - Cladistics Y1 - 2001 A1 - Janies, Daniel A. A1 - Wheeler, Ward C. SP - S71 EP - S82 KW - direct optimization KW - phylogenetics KW - poy VL - 17 N1 - PDF ER - TY - JOUR T1 - On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data JF - Invertebrate Biology Y1 - 2002 A1 - Giribet, Gonzalo A1 - Wheeler, Ward C. SP - 271 EP - 324 KW - 18S KW - 28S KW - bivalvia KW - CO1 KW - mollusca KW - morphology KW - phylogenetics KW - phylogeny KW - poy KW - systematics VL - 121 N1 - PDF ER - TY - JOUR T1 - On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data JF - Invertebrate Biology Y1 - 2002 A1 - Giribet, Gonzalo A1 - Wheeler, Ward C. SP - 271 EP - 324 KW - 18S KW - 28S KW - bivalvia KW - CO1 KW - mollusca KW - phylogenetics KW - phylogeny KW - poy KW - systematics VL - 121 ER -